Synthetic whole-genome sample (EGAD50000000119, FEGA)
Data and Resources
-
htsget (GA4GH) - aligned reads (CRAM) rangeshttp://edamontology.org/format_3462
GA4GH htsget reads endpoint (GRCh38). Example:...
-
htsget (GA4GH) - variant (VCF) rangeshttp://edamontology.org/format_3016
GA4GH htsget variants endpoint (GRCh38). Example:...
-
CRAM - whole sample, direct downloadhttp://edamontology.org/format_3462
Whole-file download of the aligned reads (CRAM), resumable (Accept-Ranges:...
-
VCF (bgzip) - whole sample, direct downloadhttp://edamontology.org/format_3016
Whole-file download of the variant calls (VCF, bgzip), resumable. The tabix...
Additional Info
| Field | Value |
|---|---|
| Title | Synthetic whole-genome sample (EGAD50000000119, FEGA) |
| Description | Synthetic single-sample whole-genome dataset (EGAD50000000119), assembly GRCh38, obtained from the Federated EGA network and hosted by ICDG. Fully synthetic, no individual data, used for node conformance and demonstration. Two files are streamable by genomic range via GA4GH htsget: aligned reads (CRAM) at htsget reads, and variant calls (VCF, bgzip+tabix) at htsget variants; the .crai/.tbi indexes are served alongside the whole-file downloads, not as separate htsget ids. Access via the resource URLs below - the htsget id is server-local (e.g. egad119.v79ES3_v.2.cram), not the EGA accession. |
| Keywords | |
| Contact points | |
| Publisher | |
| Creator | |
| Landing page | |
| Release date | |
| Modification date | |
| In Series | |
| Version | |
| Version notes | |
| Dataset status | |
| Identifier | ICDG-EGAD50000000119 |
| Frequency | |
| Provenance | |
| Type | |
| Temporal coverage | |
| Temporal resolution | |
| Spatial coverage | |
| Spatial resolution in meters | |
| Access rights | http://publications.europa.eu/resource/authority/access-right/PUBLIC |
| Other identifier | |
| Theme |
|
| Language | |
| Documentation | |
| Conforms to | |
| Is referenced by | |
| Distribution | |
| Sample | |
| Analytics | |
| Applicable legislation | |
| Has version | |
| Code values | |
| Coding system | |
| Purpose | |
| Health category | |
| Health theme | |
| Legal basis | |
| Minimum typical age | |
| Maximum typical age | |
| Number of records | |
| Number of records for unique individuals. | |
| Personal data | |
| Publisher note | |
| Publisher type | |
| Trusted Data Holder | |
| Population coverage | |
| Retention period | |
| Health data access body | |
| Qualified relation | |
| Was generated by | |
| Qualified attribution | |
| Quality annotations | |
| URI |